PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G249900.1
Common NameB456_006G249900, LOC105800613
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 136aa    MW: 14762.5 Da    PI: 7.6705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G249900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-181970155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr ++ +g + AeIrdp++  + +r++lg+f taeeAa+a+++a+ +++g
  Gorai.006G249900.1 19 TRYRGVRGRP-WGTFGAEIRDPNQ--QGARVWLGTFNTAEEAARAYDRAAYAMRG 70
                        68*****999.**********944..44*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-121970IPR001471AP2/ERF domain
CDDcd000188.70E-171979No hitNo description
PROSITE profilePS5103223.0112078IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-302080IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-222080IPR016177DNA-binding domain
SMARTSM003808.1E-322084IPR001471AP2/ERF domain
PRINTSPR003672.5E-102132IPR001471AP2/ERF domain
PRINTSPR003672.5E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEGNHKAKDD KEGSGGGMTR YRGVRGRPWG TFGAEIRDPN QQGARVWLGT FNTAEEAARA  60
YDRAAYAMRG QFAILNFPHE YPMGSGGGAA ANATTSAGSS SSAMERGKQV LEVEYLDDKL  120
LEELLEIEEK KKKKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-262178663ATERF1
2gcc_A4e-262178663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841503e-35JX584150.1 Gossypium hirsutum clone NBRI_GE17372 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487284.17e-96PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2NY497e-96A0A0D2NY49_G
STRINGBra027493.1-P8e-43(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3683022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.13e-22ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]